PH01000901G0290's details annotation
1.Annotation
ICBR annotation: bystin, putative, expressed
Blast result AT1G31660 : 9.40E-55
Blast annotation: -
2.Location
Scaffold: PH01000901
Strand: -
| Region | Start | End |
| gene | 187475 | 194149 |
| mRNA | 187475 | 194149 |
| exon | 187475 | 188098 |
| exon | 188253 | 188360 |
| exon | 188484 | 188556 |
| exon | 188848 | 188994 |
| exon | 189798 | 189845 |
| exon | 189912 | 189991 |
| exon | 191187 | 191364 |
| exon | 192242 | 194149 |
| CDS | 188045 | 188098 |
| CDS | 188253 | 188360 |
| CDS | 188484 | 188556 |
| CDS | 188848 | 188994 |
| CDS | 189798 | 189845 |
| CDS | 189912 | 189991 |
| CDS | 191187 | 191364 |
| CDS | 192242 | 192336 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000603 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05291.10 | Bystin | 92 | 225 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.