PH01000901G0430's details annotation
1.Annotation
ICBR annotation: transporter family protein, putative, expressed
Blast result AT2G20780 : 3.00E-129
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000901
Strand: -
| Region | Start | End |
| gene | 298783 | 301464 |
| mRNA | 298783 | 301464 |
| exon | 298783 | 299704 |
| exon | 299818 | 300445 |
| exon | 300906 | 301464 |
| CDS | 299092 | 299704 |
| CDS | 299818 | 300445 |
| CDS | 300906 | 301128 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00083.23 | Sugar_tr | 62 | 277 |
| PF00083.23 | Sugar_tr | 285 | 465 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
| GO:0022857 | transmembrane transporter activity |
| GO:0022891 | substrate-specific transmembrane transporter activity |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.