Annotation of co-expression genes

PH01000902G0510's details annotation

1.Annotation

ICBR annotation: tyrosine aminotransferase, putative, expressed

Blast result AT5G53970 : 1.50E-60
Blast annotation: Tyrosine transaminase family protein

2.Location

Scaffold: PH01000902
Strand: -

RegionStartEnd
gene438142447219
mRNA438142447219
exon438142438630
exon438801438872
exon438929439012
exon439213439260
exon440730440906
exon441075441287
exon441874442221
exon443035443107
exon445091445383
exon446901447219
CDS438523438630
CDS438801438872
CDS438929439012
CDS439213439260
CDS440730440906
CDS441075441287
CDS441874442221
CDS443035443107
CDS445091445383
CDS446901446957

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000582membrane,
GT8 GlycosylTransferases

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00155.20Aminotran_1_2143486

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008483transaminase activity
GO:0009058biosynthetic process
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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