Annotation of co-expression genes

PH01000903G0470's details annotation

1.Annotation

ICBR annotation: phosphate/phosphate translocator, putative, expressed

Blast result AT5G33320 : 2.00E-115
Blast annotation: Glucose-6-phosphate/phosphate translocator-related

2.Location

Scaffold: PH01000903
Strand: -

RegionStartEnd
gene282885287499
mRNA282885287499
exon282885283173
exon283322283451
exon283554283625
exon283855283974
exon284142284226
exon284576284661
exon284770284922
exon285020285142
exon286271287499
CDS283097283173
CDS283322283451
CDS283554283625
CDS283855283974
CDS284142284226
CDS284576284661
CDS284770284922
CDS285020285142
CDS286271286441

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001655transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03151.15TPT35327

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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