PH01000904G0290's details annotation
1.Annotation
ICBR annotation: YABBY domain containing protein, putative, expressed
Blast result AT4G00180 : 6.90E-46
Blast annotation: Plant-specific transcription factor YABBY family protein
2.Location
Scaffold: PH01000904
Strand: -
| Region | Start | End |
| gene | 206523 | 212600 |
| mRNA | 206523 | 212600 |
| exon | 206523 | 207797 |
| exon | 208892 | 208969 |
| exon | 209174 | 209249 |
| exon | 209618 | 209666 |
| exon | 210302 | 210377 |
| exon | 210501 | 210764 |
| exon | 210954 | 212600 |
| CDS | 207708 | 207797 |
| CDS | 208892 | 208969 |
| CDS | 209174 | 209249 |
| CDS | 209618 | 209666 |
| CDS | 210302 | 210377 |
| CDS | 210501 | 210764 |
| CDS | 210954 | 211052 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-YABBY |
| Transcription_Regulator(from PlantTFDB) | YABBY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04690.12 | YABBY | 38 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.