PH01000905G0160's details annotation
1.Annotation
ICBR annotation: acyl-protein thioesterase, putative, expressed
Blast result AT5G20060 : 4.00E-103
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000905
Strand: +
| Region | Start | End |
| gene | 121182 | 123809 |
| mRNA | 121182 | 123809 |
| exon | 121182 | 121884 |
| exon | 122089 | 122125 |
| exon | 122217 | 122286 |
| exon | 122462 | 122566 |
| exon | 122813 | 122963 |
| exon | 123055 | 123137 |
| exon | 123496 | 123589 |
| exon | 123679 | 123809 |
| CDS | 121757 | 121884 |
| CDS | 122089 | 122125 |
| CDS | 122217 | 122286 |
| CDS | 122462 | 122566 |
| CDS | 122813 | 122963 |
| CDS | 123055 | 123137 |
| CDS | 123496 | 123589 |
| CDS | 123679 | 123775 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000123 | one-carbon metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02230.15 | Abhydrolase_2 | 27 | 250 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | lysophospholipase II [EC:3.1.1.5] | ko00564 | K06130 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.