PH01000906G0160's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000906
Strand: +
| Region | Start | End |
| gene | 94166 | 100976 |
| mRNA | 94166 | 100976 |
| exon | 94166 | 95317 |
| exon | 95858 | 95898 |
| exon | 96560 | 96711 |
| exon | 96862 | 96953 |
| exon | 97399 | 97504 |
| exon | 98716 | 98924 |
| exon | 99403 | 99445 |
| exon | 99659 | 99918 |
| exon | 100018 | 100976 |
| CDS | 95157 | 95317 |
| CDS | 95858 | 95898 |
| CDS | 96560 | 96711 |
| CDS | 96862 | 96953 |
| CDS | 97399 | 97504 |
| CDS | 98716 | 98924 |
| CDS | 99403 | 99445 |
| CDS | 99659 | 99918 |
| CDS | 100018 | 100426 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001823 | large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 50 | 88 |
| PF00400.31 | WD40 | 99 | 135 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.