PH01000908G0080's details annotation
1.Annotation
ICBR annotation: OST3/OST6 family protein, putative, expressed
Blast result AT1G61790 : 9.00E-114
Blast annotation: Oligosaccharyltransferase complex/magnesium transporter family protein
2.Location
Scaffold: PH01000908
Strand: +
| Region | Start | End |
| gene | 35894 | 38392 |
| mRNA | 35894 | 38392 |
| exon | 35894 | 36298 |
| exon | 37141 | 38392 |
| CDS | 36204 | 36298 |
| CDS | 37141 | 38170 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases membrane coat, 4-alpha-glucanotransferase activity, starch_binding |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001424 | WASH_complex N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis Peroxisome |
| coexpression network | CFinderM001799 | Various_types_of_N-glycan_biosynthesis Base_excision_repair N-Glycan_biosynthesis nuclease activity, endonuclease activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04756.12 | OST3_OST6 | 69 | 364 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | oligosaccharyltransferase complex subunit gamma | ko00510 | K12669 |
| Various types of N-glycan biosynthesis | oligosaccharyltransferase complex subunit gamma | ko00513 | K12669 |
| Protein processing in endoplasmic reticulum | oligosaccharyltransferase complex subunit gamma | ko04141 | K12669 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.