Annotation of co-expression genes

PH01000908G0700's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase receptor precursor, putative, expressed

Blast result AT4G21380 : 0.00E+00
Blast annotation: receptor kinase 3

2.Location

Scaffold: PH01000908
Strand: -

RegionStartEnd
gene473876480251
mRNA473876480251
exon473876474483
exon474531474872
exon475188475366
exon475849476140
exon476243476393
exon476485476722
exon476823477033
exon477132477487
exon478432480251
CDS474043474483
CDS474531474872
CDS475188475366
CDS475849476140
CDS476243476393
CDS476485476722
CDS476823477033
CDS477132477487
CDS478432479710

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01453.23B_lectin73179
PF00954.19S_locus_glycop211319
PF08276.10PAN_2341407
PF07714.16Pkinase_Tyr530799

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0048544recognition of pollen

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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