Gene details

Annotation of co-expression genes

PH01000910G0290's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000910
Strand: -

Region	Start	End
gene	181038	191432
mRNA	181038	191432
exon	181038	182937
exon	183110	183222
exon	183321	183383
exon	183490	183558
exon	183641	183748
exon	184363	184518
exon	184668	184706
exon	184811	184879
exon	184988	185068
exon	185154	185270
exon	188125	188181
exon	188289	188326
exon	189500	189572
exon	190123	191432
CDS	182451	182937
CDS	183110	183222
CDS	183321	183383
CDS	183490	183558
CDS	183641	183748
CDS	184363	184518
CDS	184668	184706
CDS	184811	184879
CDS	184988	185068
CDS	185154	185270
CDS	188125	188181
CDS	188289	188326
CDS	189500	189572
CDS	190123	190155

UCSC genome browser

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000256	signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain,
coexpression network	CFinderM001242	mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis
coexpression network	CFinderM001402	phosphatidylinositol-mediated signaling, RNA 3'-end processing, RNA polyadenylation, phosphatidylinositol_biosynthetic_process phosphatidylinositol phosphorylation, 1-phosphatidylinositol_4-kinase_activity Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system mRNA_surveillance_pathway polynucleotide adenylyltransferase activity,
coexpression network	CFinderM001581	WASH_complex DNA_ligation_involved_in_DNA_repair drug_binding DNA_ligase_activity DNA ligase (ATP) activity, DNA recombination, DNA repair,
coexpression network	CFinderM001638	tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, NAC Transcription_Regulator(from PlantTFDB)
coexpression network	CFinderM001789	proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, C3H Transcription_Regulator(from PlantTFDB) ATP hydrolysis coupled proton transport, DNA repair, nuclease activity, endonuclease activity, hydrogen ion transmembrane transporter activity,
coexpression network	CFinderM001799	Various_types_of_N-glycan_biosynthesis Base_excision_repair N-Glycan_biosynthesis nuclease activity, endonuclease activity, NAC Transcription_Regulator(from PlantTFDB)
coexpression network	CFinderM001830	WASH_complex drug_binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00076.21	RRM_1	111	170

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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