Annotation of co-expression genes

PH01000911G0180's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT4G31990 : 3.40E-36
Blast annotation: aspartate aminotransferase 5

2.Location

Scaffold: PH01000911
Strand: +

RegionStartEnd
gene189320202586
mRNA189320202586
exon189320190318
exon193750194288
exon194733195127
exon196258196348
exon196440196535
exon196834196858
exon197276197313
exon197389197427
exon197704197728
exon198010198158
exon198246198284
exon198467198556
exon199399199463
exon199771199884
exon201093201308
exon202174202586
CDS189505190318
CDS193750194288
CDS194733195127
CDS196258196348
CDS196440196535
CDS196834196858
CDS197276197313
CDS197389197427
CDS197704197728
CDS198010198158
CDS198246198284
CDS198467198556
CDS199399199463
CDS199771199884
CDS201093201308
CDS202174202516

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001631Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13637.5Ank_4111167
PF13857.5Ank_5390438
PF13962.5PGG536582
PF00155.20Aminotran_1_2718778
PF01255.18Prenyltransf911965
PF03030.15H_PPase9721003

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004427inorganic diphosphatase activity
GO:0005515protein binding
GO:0006520cellular amino acid metabolic process
GO:0008270zinc ion binding
GO:0008483transaminase activity
GO:0009058biosynthetic process
GO:0009678hydrogen-translocating pyrophosphatase activity
GO:0015992proton transport
GO:0016020membrane
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.