Gene details

Annotation of co-expression genes

PH01000915G0470's details annotation

1.Annotation

ICBR annotation: calvin cycle protein CP12, putative, expressed

Blast result AT1G76560 : 2.80E-19
Blast annotation: CP12 domain-containing protein 3

2.Location

Scaffold: PH01000915
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000139	metabolic process, transferase activity, transferring hexosyl groups, cysteine metabolic process, phenylalanyl-tRNA aminoacylation, cysteine desulfurase activity, phenylalanine-tRNA ligase activity,
coexpression network	CFinderM000466
coexpression network	CFinderM000941	defense_response_signaling_pathway,_resistance_gene-dependent phenylalanyl-tRNA aminoacylation, defense response to bacterium, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis phenylalanine-tRNA ligase activity, tRNA binding,
coexpression network	CFinderM001321	GT66 GlycosylTransferases peroxisome_fission phenylalanyl-tRNA aminoacylation, integral_component_of_peroxisomal_membrane SAGA-type_complex tRNA aminoacylation, oligosaccharyl transferase activity, phenylalanine-tRNA ligase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF02672.14	CP12	61	131

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
null	null

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.