Annotation of co-expression genes

PH01000915G0690's details annotation

1.Annotation

ICBR annotation: peptidase, putative, expressed

Blast result AT4G38220 : 6.90E-87
Blast annotation: Peptidase M20/M25/M40 family protein

2.Location

Scaffold: PH01000915
Strand: +

RegionStartEnd
gene425973426654
mRNA425973426654
exon425973426654
CDS426133426555

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001222aminoacylase activity,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01546.27Peptidase_M20104204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004046aminoacylase activity
GO:0005737cytoplasm
GO:0006508proteolysis
GO:0006520cellular amino acid metabolic process
GO:0008152metabolic process
GO:0008237metallopeptidase activity
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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