PH01000917G0090's details annotation
1.Annotation
ICBR annotation: bZIP transcription factor domain containing protein, expressed
Blast result AT5G24800 : 1.20E-35
Blast annotation: basic leucine zipper 9
2.Location
Scaffold: PH01000917
Strand: +
| Region | Start | End |
| gene | 60088 | 63179 |
| mRNA | 60088 | 63179 |
| exon | 60088 | 60680 |
| exon | 61592 | 61700 |
| exon | 61962 | 62121 |
| exon | 62261 | 62336 |
| exon | 62509 | 62634 |
| exon | 62744 | 63179 |
| CDS | 60531 | 60680 |
| CDS | 61592 | 61700 |
| CDS | 61962 | 62121 |
| CDS | 62261 | 62336 |
| CDS | 62509 | 62634 |
| CDS | 62744 | 63019 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 135 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.