PH01000920G0420's details annotation
1.Annotation
ICBR annotation: OsSPL1 - SBP-box gene family member, expressed
Blast result AT2G47070 : 4.10E-82
Blast annotation: squamosa promoter binding protein-like 1
2.Location
Scaffold: PH01000920
Strand: +
| Region | Start | End |
| gene | 317552 | 324017 |
| mRNA | 317552 | 324017 |
| exon | 317552 | 319137 |
| exon | 320651 | 320810 |
| exon | 320908 | 320975 |
| exon | 321067 | 321141 |
| exon | 321257 | 321364 |
| exon | 321516 | 321633 |
| exon | 321755 | 321896 |
| exon | 321975 | 322116 |
| exon | 322197 | 322253 |
| exon | 322491 | 322811 |
| exon | 323344 | 324017 |
| CDS | 318703 | 319137 |
| CDS | 320651 | 320810 |
| CDS | 320908 | 320975 |
| CDS | 321067 | 321141 |
| CDS | 321257 | 321364 |
| CDS | 321516 | 321633 |
| CDS | 321755 | 321896 |
| CDS | 321975 | 322116 |
| CDS | 322197 | 322253 |
| CDS | 322491 | 322811 |
| CDS | 323344 | 323793 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.