PH01000921G0130's details annotation
1.Annotation
ICBR annotation: lysM domain containing protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000921
Strand: +
| Region | Start | End |
| gene | 60731 | 63417 |
| mRNA | 60731 | 63417 |
| exon | 60731 | 61155 |
| exon | 62572 | 62647 |
| exon | 62756 | 63417 |
| CDS | 60898 | 61155 |
| CDS | 62572 | 62647 |
| CDS | 62756 | 63234 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000055 | hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, |
| coexpression network | CFinderM000783 | carbohydrate metabolic process, CE13 Carbohydrate_Esterases hydrolase activity, hydrolyzing O-glycosyl compounds, |
| coexpression network | CFinderM000784 | carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, hydrolyzing O-glycosyl compounds, integral to membrane, polygalacturonase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.