PH01000921G0350's details annotation
1.Annotation
ICBR annotation: adapitin protein, putative, expressed
Blast result AT5G22780 : 0.00E+00
Blast annotation: Adaptor protein complex AP-2, alpha subunit
2.Location
Scaffold: PH01000921
Strand: +
| Region | Start | End |
| gene | 222737 | 228758 |
| mRNA | 222737 | 228758 |
| exon | 222737 | 223001 |
| exon | 223222 | 223314 |
| exon | 223521 | 223622 |
| exon | 223769 | 223866 |
| exon | 224795 | 224876 |
| exon | 224998 | 225086 |
| exon | 225398 | 225503 |
| exon | 225583 | 225648 |
| exon | 226015 | 226121 |
| exon | 226214 | 226318 |
| exon | 226403 | 226523 |
| exon | 226650 | 226835 |
| exon | 226914 | 227213 |
| exon | 227379 | 227459 |
| exon | 227590 | 227754 |
| exon | 227842 | 227928 |
| exon | 228019 | 228144 |
| exon | 228405 | 228485 |
| exon | 228559 | 228630 |
| exon | 228708 | 228758 |
| CDS | 222939 | 223001 |
| CDS | 223222 | 223314 |
| CDS | 223521 | 223622 |
| CDS | 223769 | 223866 |
| CDS | 224795 | 224876 |
| CDS | 224998 | 225086 |
| CDS | 225398 | 225503 |
| CDS | 225583 | 225648 |
| CDS | 226015 | 226121 |
| CDS | 226214 | 226318 |
| CDS | 226403 | 226523 |
| CDS | 226650 | 226835 |
| CDS | 226914 | 227213 |
| CDS | 227379 | 227459 |
| CDS | 227590 | 227754 |
| CDS | 227842 | 227928 |
| CDS | 228019 | 228144 |
| CDS | 228405 | 228485 |
| CDS | 228559 | 228630 |
| CDS | 228708 | 228734 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01602.19 | Adaptin_N | 19 | 326 |
| PF02883.19 | Alpha_adaptinC2 | 523 | 619 |
| PF02296.15 | Alpha_adaptin_C | 631 | 711 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
| GO:0030131 | clathrin adaptor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.