PH01000928G0560's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT1G73360 : 4.00E-140
Blast annotation: homeodomain GLABROUS 11
2.Location
Scaffold: PH01000928
Strand: +
| Region | Start | End |
| gene | 446124 | 451000 |
| mRNA | 446124 | 451000 |
| exon | 446124 | 446359 |
| exon | 446475 | 446592 |
| exon | 447018 | 447455 |
| exon | 447561 | 447659 |
| exon | 447767 | 447976 |
| exon | 448091 | 448271 |
| exon | 448362 | 448498 |
| exon | 448741 | 448830 |
| exon | 448982 | 451000 |
| CDS | 446265 | 446359 |
| CDS | 446475 | 446592 |
| CDS | 447018 | 447455 |
| CDS | 447561 | 447659 |
| CDS | 447767 | 447976 |
| CDS | 448091 | 448271 |
| CDS | 448362 | 448498 |
| CDS | 448741 | 448830 |
| CDS | 448982 | 449353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 16 | 71 |
| PF01852.18 | START | 143 | 364 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.