PH01000931G0400's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G34540 : 1.20E-84
Blast annotation: NmrA-like negative transcriptional regulator family protein
2.Location
Scaffold: PH01000931
Strand: +
| Region | Start | End |
| gene | 282870 | 299840 |
| mRNA | 282870 | 299840 |
| exon | 282870 | 284594 |
| exon | 284690 | 284824 |
| exon | 285220 | 285269 |
| exon | 285887 | 286137 |
| exon | 286200 | 286460 |
| exon | 287793 | 287849 |
| exon | 288729 | 288848 |
| exon | 289549 | 289623 |
| exon | 291075 | 292339 |
| exon | 292687 | 292797 |
| exon | 292890 | 292922 |
| exon | 295023 | 295191 |
| exon | 295275 | 295456 |
| exon | 298481 | 298567 |
| exon | 298690 | 298764 |
| exon | 298849 | 298894 |
| exon | 299637 | 299840 |
| CDS | 284406 | 284594 |
| CDS | 284690 | 284824 |
| CDS | 285220 | 285269 |
| CDS | 285887 | 286137 |
| CDS | 286200 | 286460 |
| CDS | 287793 | 287849 |
| CDS | 288729 | 288848 |
| CDS | 289549 | 289623 |
| CDS | 291075 | 292339 |
| CDS | 292687 | 292797 |
| CDS | 292890 | 292922 |
| CDS | 295023 | 295191 |
| CDS | 295275 | 295456 |
| CDS | 298481 | 298567 |
| CDS | 298690 | 298764 |
| CDS | 298849 | 298894 |
| CDS | 299637 | 299692 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05368.12 | NmrA | 10 | 279 |
| PF13177.5 | DNA_pol3_delta2 | 793 | 959 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006260 | DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.