PH01000933G0470's details annotation
1.Annotation
ICBR annotation: two-component response regulator, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000933
Strand: +
| Region | Start | End |
| gene | 326498 | 331892 |
| mRNA | 326498 | 331892 |
| exon | 326498 | 326701 |
| exon | 327748 | 327924 |
| exon | 328014 | 328394 |
| exon | 328473 | 328549 |
| exon | 328992 | 329046 |
| exon | 329240 | 329382 |
| exon | 330937 | 331892 |
| CDS | 326614 | 326701 |
| CDS | 327748 | 327924 |
| CDS | 328014 | 328394 |
| CDS | 328473 | 328549 |
| CDS | 328992 | 329046 |
| CDS | 329240 | 329382 |
| CDS | 330937 | 331875 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-ARR-B |
| Transcription_Regulator(from PlantTFDB) | ARR-B |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00072.23 | Response_reg | 6 | 117 |
| PF00249.30 | Myb_DNA-binding | 196 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000156 | phosphorelay response regulator activity |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.