PH01000936G0360's details annotation
1.Annotation
ICBR annotation: zinc finger, RING-type, putative, expressed
Blast result AT5G01520 : 1.00E-37
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000936
Strand: +
| Region | Start | End |
| gene | 231390 | 234226 |
| mRNA | 231390 | 234226 |
| exon | 231390 | 232406 |
| exon | 232965 | 233021 |
| exon | 233124 | 233214 |
| exon | 233275 | 234226 |
| CDS | 232236 | 232406 |
| CDS | 232965 | 233021 |
| CDS | 233124 | 233214 |
| CDS | 233275 | 233630 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00097.24 | zf-C3HC4 | 158 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.