Annotation of co-expression genes

PH01000937G0140's details annotation

1.Annotation

ICBR annotation: metal cation transporter, putative, expressed

Blast result AT1G68100 : 3.80E-86
Blast annotation: ZIP metal ion transporter family

2.Location

Scaffold: PH01000937
Strand: +

RegionStartEnd
gene98410106835
mRNA98410106835
exon9841098900
exon9902099103
exon9920199254
exon101591101695
exon102058102320
exon104741104893
exon105027105134
exon105922106023
exon106105106149
exon106324106835
CDS9856798900
CDS9902099103
CDS9920199254
CDS101591101695
CDS102058102320
CDS104741104893
CDS105027105134
CDS105922106023
CDS106105106149
CDS106324106476

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000789Glycine,_serine_and_threonine_metabolism
Proteasome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02535.21Zip112462

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0030001metal ion transport
GO:0046873metal ion transmembrane transporter activity
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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