PH01000941G0520's details annotation
1.Annotation
ICBR annotation: CSLE6 - cellulose synthase-like family E, expressed
Blast result AT1G55850 : 0.00E+00
Blast annotation: cellulose synthase like E1
2.Location
Scaffold: PH01000941
Strand: -
| Region | Start | End |
| gene | 347462 | 353638 |
| mRNA | 347462 | 353638 |
| exon | 347462 | 348108 |
| exon | 348210 | 348782 |
| exon | 348885 | 349097 |
| exon | 349335 | 349466 |
| exon | 349563 | 349703 |
| exon | 349878 | 350196 |
| exon | 351976 | 353638 |
| CDS | 347569 | 348108 |
| CDS | 348210 | 348782 |
| CDS | 348885 | 349097 |
| CDS | 349335 | 349466 |
| CDS | 349563 | 349703 |
| CDS | 349878 | 350196 |
| CDS | 351976 | 352244 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000565 | Ubiquinone_and_other_terpenoid-quinone_biosynthesis leucyl-tRNA aminoacylation, RLK-Pelle_LRR-Xa (from iTAK) GT2 GlycosylTransferases Aminoacyl-tRNA_biosynthesis SET Transcription_Regulator(from iTAK) prenyltransferase activity, leucine-tRNA ligase activity, aminoacyl-tRNA_editing_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03552.13 | Cellulose_synt | 98 | 386 |
| PF03552.13 | Cellulose_synt | 414 | 719 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.