PH01000942G0490's details annotation
1.Annotation
ICBR annotation: elongation factor, putative, expressed
Blast result AT1G06220 : 3.20E-96
Blast annotation: Ribosomal protein S5/Elongation factor G/III/V family protein
2.Location
Scaffold: PH01000942
Strand: -
| Region | Start | End |
| gene | 351714 | 355449 |
| mRNA | 351714 | 355449 |
| exon | 351714 | 352390 |
| exon | 352471 | 352711 |
| exon | 352804 | 352914 |
| exon | 353098 | 353289 |
| exon | 353435 | 353588 |
| exon | 353843 | 354494 |
| exon | 355002 | 355449 |
| CDS | 352293 | 352390 |
| CDS | 352471 | 352711 |
| CDS | 352804 | 352914 |
| CDS | 353098 | 353289 |
| CDS | 353435 | 353588 |
| CDS | 353843 | 354494 |
| CDS | 355002 | 355173 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03764.17 | EFG_IV | 325 | 379 |
| PF00679.23 | EFG_C | 381 | 468 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.