PH01000943G0250's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT5G65260 : 7.70E-61
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000943
Strand: -
| Region | Start | End |
| gene | 133662 | 138109 |
| mRNA | 133662 | 138109 |
| exon | 133662 | 133778 |
| exon | 133847 | 133968 |
| exon | 134077 | 134268 |
| exon | 136625 | 136695 |
| exon | 137738 | 137837 |
| exon | 137916 | 138109 |
| CDS | 133730 | 133778 |
| CDS | 133847 | 133968 |
| CDS | 134077 | 134268 |
| CDS | 136625 | 136695 |
| CDS | 137738 | 137837 |
| CDS | 137916 | 138020 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 88 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | polyadenylate-binding protein 2 | ko03015 | K14396 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.