PH01000946G0030's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G05090 : 4.00E-166
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000946
Strand: -
| Region | Start | End |
| gene | 12430 | 18910 |
| mRNA | 12430 | 18910 |
| exon | 12430 | 13051 |
| exon | 13550 | 13739 |
| exon | 14207 | 14300 |
| exon | 14869 | 15221 |
| exon | 15499 | 15633 |
| exon | 15716 | 15754 |
| exon | 15936 | 16001 |
| exon | 16091 | 16186 |
| exon | 16769 | 17002 |
| exon | 17082 | 17202 |
| exon | 17361 | 17396 |
| exon | 18116 | 18910 |
| CDS | 12951 | 13051 |
| CDS | 13550 | 13739 |
| CDS | 14207 | 14300 |
| CDS | 14869 | 15221 |
| CDS | 15499 | 15633 |
| CDS | 15716 | 15754 |
| CDS | 15936 | 16001 |
| CDS | 16091 | 16186 |
| CDS | 16769 | 17002 |
| CDS | 17082 | 17202 |
| CDS | 17361 | 17396 |
| CDS | 18116 | 18210 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001729 | mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) protein binding, transferase activity, transferring acyl groups, |
| coexpression network | CFinderM001731 | Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11816.7 | DUF3337 | 365 | 488 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.