PH01000948G0110's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT1G21580 : 1.00E-121
Blast annotation: Zinc finger C-x8-C-x5-C-x3-H type family protein
2.Location
Scaffold: PH01000948
Strand: +
| Region | Start | End |
| gene | 44726 | 54416 |
| mRNA | 44726 | 54416 |
| exon | 44726 | 50220 |
| exon | 50769 | 50970 |
| exon | 51048 | 51195 |
| exon | 51670 | 51754 |
| exon | 52209 | 52278 |
| exon | 52409 | 52679 |
| exon | 52755 | 52797 |
| exon | 52887 | 52990 |
| exon | 53609 | 54416 |
| CDS | 46086 | 50220 |
| CDS | 50769 | 50970 |
| CDS | 51048 | 51195 |
| CDS | 51670 | 51754 |
| CDS | 52209 | 52278 |
| CDS | 52409 | 52679 |
| CDS | 52755 | 52797 |
| CDS | 52887 | 52990 |
| CDS | 53609 | 54025 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000173 | response to oxidative stress, peroxidase activity, heme binding, oxidation-reduction process, Phenylpropanoid_biosynthesis Phenylalanine_metabolism Methane_metabolism |
| coexpression network | CFinderM000175 | Ribosome translation, Ribosome small ribosomal subunit, structural constituent of ribosome, intracellular, eukaryotic translation elongation factor 1 complex, translational elongation, translation elongation factor activity, |
| coexpression network | CFinderM000505 | Phagosome regulation of actin filament polymerization, cytoskeleton, GRAS Transcription_Regulator(from PlantTFDB) Rho GDP-dissociation inhibitor activity, |
| coexpression network | CFinderM000519 | LIM Transcription_Regulator(from iTAK) mitochondrial inner membrane, |
| coexpression network | CFinderM000910 | translation, phosphopyruvate hydratase complex, Ribosome intracellular, small ribosomal subunit, phosphopyruvate hydratase activity, structural constituent of ribosome, glycolysis, Methane_metabolism RNA_degradation Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001233 | Ribosome translation, structural constituent of ribosome, intracellular, Ribosome mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, small ribosomal subunit, rRNA binding, hydrogen ion transmembrane transporter activity, Oxidative_phosphorylation |
| coexpression network | CFinderM001606 | LIM Transcription_Regulator(from iTAK) mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process actin cytoskeleton organization, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.