PH01000948G0320's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT4G36920 : 4.30E-62
Blast annotation: Integrase-type DNA-binding superfamily protein
2.Location
Scaffold: PH01000948
Strand: -
| Region | Start | End |
| gene | 198456 | 204246 |
| mRNA | 198456 | 204246 |
| exon | 198456 | 201715 |
| exon | 201867 | 202028 |
| exon | 202149 | 202276 |
| exon | 202361 | 202452 |
| exon | 202558 | 202602 |
| exon | 202716 | 202861 |
| exon | 202977 | 203064 |
| exon | 203155 | 203185 |
| exon | 203307 | 203332 |
| exon | 203473 | 204246 |
| CDS | 201398 | 201715 |
| CDS | 201867 | 202028 |
| CDS | 202149 | 202276 |
| CDS | 202361 | 202452 |
| CDS | 202558 | 202602 |
| CDS | 202716 | 202861 |
| CDS | 202977 | 203064 |
| CDS | 203155 | 203185 |
| CDS | 203307 | 203332 |
| CDS | 203473 | 203846 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-AP2 |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 113 | 155 |
| PF00847.19 | AP2 | 198 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.