Annotation of co-expression genes

PH01000948G0640's details annotation

1.Annotation

ICBR annotation: paxneb-related protein, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000948
Strand: +

RegionStartEnd
gene396893398556
mRNA396893398556
exon396893397617
exon397992398118
exon398169398556
CDS397511397617
CDS397992398118
CDS398169398531

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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