PH01000949G0210's details annotation
1.Annotation
ICBR annotation: ankyrin repeat domain-containing protein 28, putative, expressed
Blast result AT2G28840 : 5.00E-138
Blast annotation: XB3 ortholog 1 in Arabidopsis thaliana
2.Location
Scaffold: PH01000949
Strand: +
| Region | Start | End |
| gene | 96424 | 99720 |
| mRNA | 96424 | 99720 |
| exon | 96424 | 96544 |
| exon | 96774 | 96833 |
| exon | 96932 | 97003 |
| exon | 97083 | 97201 |
| exon | 97287 | 97427 |
| exon | 97515 | 97622 |
| exon | 97940 | 98201 |
| exon | 98317 | 99720 |
| CDS | 96533 | 96544 |
| CDS | 96774 | 96833 |
| CDS | 96932 | 97003 |
| CDS | 97083 | 97201 |
| CDS | 97287 | 97427 |
| CDS | 97515 | 97622 |
| CDS | 97940 | 98201 |
| CDS | 98317 | 98721 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000014 | transcription, DNA-dependent, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00023.29 | Ank | 24 | 51 |
| PF12796.6 | Ank_2 | 56 | 125 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.