PH01000953G0340's details annotation
1.Annotation
ICBR annotation: roothairless 1, putative, expressed
Blast result AT1G47550 : 3.50E-84
Blast annotation: exocyst complex component sec3A
2.Location
Scaffold: PH01000953
Strand: -
| Region | Start | End |
| gene | 238723 | 241824 |
| mRNA | 238723 | 241824 |
| exon | 238723 | 239789 |
| exon | 239967 | 240056 |
| exon | 240384 | 240449 |
| exon | 240989 | 241057 |
| exon | 241143 | 241251 |
| exon | 241382 | 241479 |
| exon | 241732 | 241824 |
| CDS | 239679 | 239789 |
| CDS | 239967 | 240056 |
| CDS | 240384 | 240449 |
| CDS | 240989 | 241057 |
| CDS | 241143 | 241251 |
| CDS | 241382 | 241479 |
| CDS | 241732 | 241791 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001369 | GT2 GlycosylTransferases N-Glycan_biosynthesis regulation of Rab GTPase activity, nucleosome assembly, |
| coexpression network | CFinderM001518 | SNARE_interactions_in_vesicular_transport protein phosphatase type 2A complex, SNAP receptor activity, protein phosphatase type 2A regulator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09763.8 | Sec3_C | 7 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.