PH01000953G0630's details annotation
1.Annotation
ICBR annotation: endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Blast result AT1G47510 : 3.50E-72
Blast annotation: inositol polyphosphate 5-phosphatase 11
2.Location
Scaffold: PH01000953
Strand: +
| Region | Start | End |
| gene | 392010 | 397072 |
| mRNA | 392010 | 397072 |
| exon | 392010 | 392695 |
| exon | 394122 | 394275 |
| exon | 394355 | 394529 |
| exon | 394575 | 394651 |
| exon | 395620 | 395710 |
| exon | 396265 | 396452 |
| exon | 396523 | 396660 |
| exon | 396772 | 397072 |
| CDS | 392352 | 392695 |
| CDS | 394122 | 394275 |
| CDS | 394355 | 394529 |
| CDS | 394575 | 394651 |
| CDS | 395620 | 395710 |
| CDS | 396265 | 396452 |
| CDS | 396523 | 396660 |
| CDS | 396772 | 396936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03372.22 | Exo_endo_phos | 160 | 427 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046856 | phosphatidylinositol dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.