PH01000954G0350's details annotation
1.Annotation
ICBR annotation: Sad1 / UNC-like C-terminal domain containing protein, putative, expressed
Blast result AT5G04990 : 4.00E-27
Blast annotation: SAD1/UNC-84 domain protein 1
2.Location
Scaffold: PH01000954
Strand: -
| Region | Start | End |
| gene | 195447 | 198803 |
| mRNA | 195447 | 198803 |
| exon | 195447 | 196658 |
| exon | 196709 | 197284 |
| exon | 198253 | 198803 |
| CDS | 196602 | 196658 |
| CDS | 196709 | 197284 |
| CDS | 198253 | 198750 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MADS-M-type |
| Transcription_Regulator(from PlantTFDB) | M-type_MADS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00319.17 | SRF-TF | 17 | 64 |
| PF07738.12 | Sad1_UNC | 314 | 362 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.