PH01000954G0510's details annotation
1.Annotation
ICBR annotation: ATP synthase gamma chain, putative, expressed
Blast result AT2G33040 : 5.00E-130
Blast annotation: gamma subunit of Mt ATP synthase
2.Location
Scaffold: PH01000954
Strand: -
| Region | Start | End |
| gene | 356550 | 363217 |
| mRNA | 356550 | 363217 |
| exon | 356550 | 358184 |
| exon | 358317 | 358438 |
| exon | 358626 | 358745 |
| exon | 358854 | 358976 |
| exon | 360023 | 360150 |
| exon | 360230 | 360343 |
| exon | 360915 | 361067 |
| exon | 361158 | 361201 |
| exon | 362680 | 363217 |
| CDS | 358112 | 358184 |
| CDS | 358317 | 358438 |
| CDS | 358626 | 358745 |
| CDS | 358854 | 358976 |
| CDS | 360023 | 360150 |
| CDS | 360230 | 360343 |
| CDS | 360915 | 361067 |
| CDS | 361158 | 361201 |
| CDS | 362680 | 362747 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000741 | Oxidative_phosphorylation ATP metabolic process, proton-transporting two-sector ATPase complex, catalytic domain, proton transport, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, ATP hydrolysis coupled proton transport, Phagosome proton-transporting V-type ATPase, V1 domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP synthesis coupled proton transport, hydrogen ion transporting ATP synthase activity, rotational mechanism, |
| coexpression network | CFinderM000927 | proton-transporting two-sector ATPase complex, catalytic domain, Oxidative_phosphorylation ATP metabolic process, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, proton transport, ATP hydrolysis coupled proton transport, Phagosome proton-transporting V-type ATPase, V1 domain, glucose-6-phosphate isomerase activity, proton-transporting ATP synthase complex, catalytic core F(1), gluconeogenesis, hydrogen ion transporting ATP synthase activity, rotational mechanism, ATP synthesis coupled proton transport, actin binding, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00231.18 | ATP-synt | 37 | 311 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | F-type H+-transporting ATPase subunit gamma [EC:3.6.3.-] | ko00190 | K02136 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015986 | ATP synthesis coupled proton transport |
| GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.