PH01000959G0630's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT2G34930 : 3.00E-124
Blast annotation: disease resistance family protein / LRR family protein
2.Location
Scaffold: PH01000959
Strand: +
| Region | Start | End |
| gene | 421301 | 424302 |
| mRNA | 421301 | 424302 |
| exon | 421301 | 424302 |
| CDS | 421359 | 424184 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000293 | RLK-Pelle_CrRLK1L-1 (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) GT1 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 38 | 76 |
| PF13855.5 | LRR_8 | 269 | 326 |
| PF13516.5 | LRR_6 | 391 | 409 |
| PF00560.32 | LRR_1 | 677 | 698 |
| PF13855.5 | LRR_8 | 785 | 823 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.