PH01000960G0350's details annotation
1.Annotation
ICBR annotation: uncharacterized oxidoreductase, putative, expressed
Blast result AT4G09670 : 9.50E-43
Blast annotation: Oxidoreductase family protein
2.Location
Scaffold: PH01000960
Strand: -
| Region | Start | End |
| gene | 223480 | 224959 |
| mRNA | 223480 | 224959 |
| exon | 223480 | 224959 |
| CDS | 224400 | 224879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000388 | HMG Transcription_Regulator(from iTAK) cytoskeleton, regulation of actin filament polymerization, Pentose_and_glucuronate_interconversions Metabolism_of_xenobiotics_by_cytochrome_P450 acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01408.21 | GFO_IDH_MocA | 13 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose and glucuronate interconversions | dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20;EC:1.1.1.179] | ko00040 | K00078 |
| Metabolism of xenobiotics by cytochrome P450 | dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20;EC:1.1.1.179] | ko00980 | K00078 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.