PH01000963G0520's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT4G29180 : 2.30E-56
Blast annotation: root hair specific 16
2.Location
Scaffold: PH01000963
Strand: +
| Region | Start | End |
| gene | 390804 | 400993 |
| mRNA | 390804 | 400993 |
| exon | 390804 | 390955 |
| exon | 393686 | 394256 |
| exon | 394997 | 395169 |
| exon | 395287 | 395442 |
| exon | 397329 | 397467 |
| exon | 397605 | 397651 |
| exon | 399978 | 400049 |
| exon | 400202 | 400391 |
| exon | 400443 | 400993 |
| CDS | 390868 | 390955 |
| CDS | 393686 | 394256 |
| CDS | 394997 | 395169 |
| CDS | 395287 | 395442 |
| CDS | 397329 | 397467 |
| CDS | 397605 | 397651 |
| CDS | 399978 | 400049 |
| CDS | 400202 | 400391 |
| CDS | 400443 | 400926 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001314 | RLK-Pelle_LRR-I-1 (from iTAK) Tryptophan_metabolism Lysine_degradation Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, tricarboxylic acid cycle, SRP-dependent cotranslational protein targeting to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12819.6 | Malectin_like | 34 | 220 |
| PF07714.16 | Pkinase_Tyr | 398 | 593 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.