PH01000967G0490's details annotation
1.Annotation
ICBR annotation: plant protein of unknown function DUF869 domain containing protein, expressed
Blast result AT1G19835 : 5.00E-175
Blast annotation: Plant protein of unknown function (DUF869)
2.Location
Scaffold: PH01000967
Strand: +
| Region | Start | End |
| gene | 352560 | 369468 |
| mRNA | 352560 | 369468 |
| exon | 352560 | 352968 |
| exon | 354456 | 354651 |
| exon | 356177 | 356268 |
| exon | 356603 | 357180 |
| exon | 357669 | 357724 |
| exon | 357857 | 357984 |
| exon | 358051 | 360215 |
| exon | 360299 | 360359 |
| exon | 360726 | 361147 |
| exon | 361577 | 361811 |
| exon | 361975 | 361995 |
| exon | 362309 | 362489 |
| exon | 363277 | 363391 |
| exon | 363431 | 364090 |
| exon | 364300 | 364737 |
| exon | 364824 | 365564 |
| exon | 365946 | 366915 |
| exon | 367105 | 367369 |
| exon | 367998 | 368080 |
| exon | 368189 | 369468 |
| CDS | 352879 | 352968 |
| CDS | 354456 | 354651 |
| CDS | 356177 | 356268 |
| CDS | 356603 | 357180 |
| CDS | 357669 | 357724 |
| CDS | 357857 | 357984 |
| CDS | 358051 | 360215 |
| CDS | 360299 | 360359 |
| CDS | 360726 | 361147 |
| CDS | 361577 | 361811 |
| CDS | 361975 | 361995 |
| CDS | 362309 | 362489 |
| CDS | 363277 | 363391 |
| CDS | 363431 | 364090 |
| CDS | 364300 | 364737 |
| CDS | 364824 | 365564 |
| CDS | 365946 | 366915 |
| CDS | 367105 | 367369 |
| CDS | 367998 | 368080 |
| CDS | 368189 | 368461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001136 | regulation of ARF protein signal transduction, DNA integration, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05911.10 | FPP C | 337 | 1156 |
| PF00665.25 | rve | 2116 | 2224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0015074 | DNA integration |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.