PH01000968G0550's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT2G22310 : 1.00E-134
Blast annotation: ubiquitin-specific protease 4
2.Location
Scaffold: PH01000968
Strand: -
| Region | Start | End |
| gene | 373155 | 375826 |
| mRNA | 373155 | 375826 |
| exon | 373155 | 374208 |
| exon | 374521 | 374702 |
| exon | 374799 | 374984 |
| exon | 375252 | 375320 |
| exon | 375370 | 375468 |
| exon | 375712 | 375826 |
| CDS | 373809 | 374208 |
| CDS | 374521 | 374702 |
| CDS | 374799 | 374984 |
| CDS | 375252 | 375320 |
| CDS | 375370 | 375468 |
| CDS | 375712 | 375780 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 80 | 327 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.