Annotation of co-expression genes

PH01000969G0480's details annotation

1.Annotation

ICBR annotation: zinc ion binding protein, putative, expressed

Blast result AT3G23990 : 3.90E-90
Blast annotation: heat shock protein 60

2.Location

Scaffold: PH01000969
Strand: -

RegionStartEnd
gene325867334082
mRNA325867334082
exon325867329163
exon329341330337
exon330401330946
exon331925332442
exon333648334082
CDS327632329163
CDS329341330337
CDS330401330946
CDS331925332442
CDS333648333810

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000322Endocytosis
protein refolding,
vesicle docking involved in exocytosis,
nucleus,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01190.16Pollen_Ole_e_I32126
PF00118.23Cpn60_TCP1421630
PF07967.12zf-C3HC697740

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0005634nucleus
GO:0005737cytoplasm
GO:0008270zinc ion binding
GO:0042026protein refolding
GO:0044267cellular protein metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.