PH01000972G0320's details annotation
1.Annotation
ICBR annotation: radical SAM enzyme, putative, expressed
Blast result AT1G60230 : 5.00E-150
Blast annotation: Radical SAM superfamily protein
2.Location
Scaffold: PH01000972
Strand: +
| Region | Start | End |
| gene | 228650 | 232272 |
| mRNA | 228650 | 232272 |
| exon | 228650 | 228972 |
| exon | 229077 | 229179 |
| exon | 229840 | 229937 |
| exon | 230010 | 230140 |
| exon | 230219 | 230327 |
| exon | 230862 | 231083 |
| exon | 231137 | 231273 |
| exon | 231620 | 232272 |
| CDS | 228805 | 228972 |
| CDS | 229077 | 229179 |
| CDS | 229840 | 229937 |
| CDS | 230010 | 230140 |
| CDS | 230219 | 230327 |
| CDS | 230862 | 231083 |
| CDS | 231137 | 231273 |
| CDS | 231620 | 231896 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04055.20 | Radical_SAM | 151 | 326 |
| PF13394.5 | Fer4_14 | 155 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005737 | cytoplasm |
| GO:0006364 | rRNA processing |
| GO:0008173 | RNA methyltransferase activity |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.