Annotation of co-expression genes

PH01000973G0500's details annotation

1.Annotation

ICBR annotation: KH domain-containing protein, putative, expressed

Blast result AT2G25970 : 3.20E-94
Blast annotation: KH domain-containing protein

2.Location

Scaffold: PH01000973
Strand: +

RegionStartEnd
gene301271307179
mRNA301271307179
exon301271301743
exon302598302707
exon302830303015
exon303105303197
exon303393303464
exon303896304012
exon305796307179
CDS301389301743
CDS302598302707
CDS302830303015
CDS303105303197
CDS303393303464
CDS303896304012
CDS305796307025

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000761tRNA aminoacylation for protein translation,
coexpression networkCFinderM000765protein import into nucleus,
nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
Spliceosome
coexpression networkCFinderM000934protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,
coexpression networkCFinderM000935tRNA aminoacylation for protein translation,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00013.28KH_1147212
PF00013.28KH_1240306

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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