PH01000978G0280's details annotation
1.Annotation
ICBR annotation: male sterility protein, putative, expressed
Blast result AT4G33790 : 2.00E-125
Blast annotation: Jojoba acyl CoA reductase-related male sterility protein
2.Location
Scaffold: PH01000978
Strand: +
| Region | Start | End |
| gene | 191706 | 197027 |
| mRNA | 191706 | 197027 |
| exon | 191706 | 191928 |
| exon | 192044 | 192147 |
| exon | 193907 | 194106 |
| exon | 194214 | 194314 |
| exon | 194416 | 194611 |
| exon | 194705 | 194866 |
| exon | 194975 | 195056 |
| exon | 196202 | 196602 |
| exon | 196780 | 197027 |
| CDS | 191850 | 191928 |
| CDS | 192044 | 192147 |
| CDS | 193907 | 194106 |
| CDS | 194214 | 194314 |
| CDS | 194416 | 194611 |
| CDS | 194705 | 194866 |
| CDS | 194975 | 195056 |
| CDS | 196202 | 196602 |
| CDS | 196780 | 196930 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000282 | Cutin,_suberine_and_wax_biosynthesis fatty-acyl-CoA_reductase_(alcohol-forming)_activity Peroxisome lipid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07993.11 | NAD_binding_4 | 17 | 318 |
| PF03015.18 | Sterile | 394 | 491 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 82 Cutin, suberine and wax biosynthesis | fatty acyl-CoA reductase [EC:1.2.1.-] | K13356 | |
| Peroxisome | fatty acyl-CoA reductase [EC:1.2.1.-] | ko04146 | K13356 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.