Annotation of co-expression genes

PH01000980G0520's details annotation

1.Annotation

ICBR annotation: glycosyltransferase, putative, expressed

Blast result AT3G10320 : 5.60E-45
Blast annotation: Glycosyltransferase family 61 protein

2.Location

Scaffold: PH01000980
Strand: +

RegionStartEnd
gene365586368275
mRNA365586368275
exon365586366977
exon367543368275
CDS366497366977
CDS367543367682

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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