Annotation of co-expression genes

PH01000980G0540's details annotation

1.Annotation

ICBR annotation: mannosylglycoprotein endo-beta-mannosidase, putative, expressed

Blast result AT1G09010 : 0.00E+00
Blast annotation: glycoside hydrolase family 2 protein

2.Location

Scaffold: PH01000980
Strand: -

RegionStartEnd
gene377021389293
mRNA377021389293
exon377021377886
exon377963378190
exon378286378954
exon379364379568
exon379646379815
exon382651382878
exon383621383759
exon385369385557
exon385877389293
CDS377092377886
CDS377963378190
CDS378286378954
CDS379364379568
CDS379646379815
CDS382651382878
CDS383621383759
CDS385369385557
CDS385877385986

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00703.20Glyco_hydro_2222266
PF02836.16Glyco_hydro_2_C280408

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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