PH01000981G0230's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative
Blast result AT3G14470 : 2.20E-69
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01000981
Strand: +
| Region | Start | End |
| gene | 163480 | 170846 |
| mRNA | 163480 | 170846 |
| exon | 163480 | 164020 |
| exon | 164297 | 164379 |
| exon | 164533 | 165465 |
| exon | 165499 | 166868 |
| exon | 166951 | 168127 |
| exon | 168983 | 170846 |
| CDS | 163720 | 164020 |
| CDS | 164297 | 164379 |
| CDS | 164533 | 165465 |
| CDS | 165499 | 166868 |
| CDS | 166951 | 168127 |
| CDS | 168983 | 169804 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 169 | 437 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.