Annotation of co-expression genes

PH01000981G0470's details annotation

1.Annotation

ICBR annotation: peptide transporter PTR2, putative, expressed

Blast result AT1G59740 : 2.00E-106
Blast annotation: Major facilitator superfamily protein

2.Location

Scaffold: PH01000981
Strand: -

RegionStartEnd
gene303890309561
mRNA303890309561
exon303890304375
exon304868304979
exon305100305224
exon306755306772
exon307801308268
exon308846309063
exon309216309561
CDS303917304375
CDS304868304979
CDS305100305224
CDS306755306772
CDS307801308268
CDS308846309063
CDS309216309309

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000210transferase activity, transferring acyl groups other than amino-acyl groups,
RLK-Pelle_LRR-XI-1 (from iTAK)
RLK-Pelle_L-LEC (from iTAK)
RLK-Pelle_LRR-XII-1 (from iTAK)
coexpression networkCFinderM000366RLK-Pelle_LRR-XII-1 (from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00854.20PTR292262
PF00854.20PTR2342404

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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