PH01000982G0620's details annotation
1.Annotation
ICBR annotation: CHR4/MI-2-LIKE, putative, expressed
Blast result AT5G44800 : 1.60E-68
Blast annotation: chromatin remodeling 4
2.Location
Scaffold: PH01000982
Strand: +
| Region | Start | End |
| gene | 437267 | 443707 |
| mRNA | 437267 | 443707 |
| exon | 437267 | 437873 |
| exon | 440233 | 440300 |
| exon | 440401 | 440782 |
| exon | 441330 | 443707 |
| CDS | 437820 | 437873 |
| CDS | 440233 | 440300 |
| CDS | 440401 | 440782 |
| CDS | 441330 | 443411 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000911 | intracellular, Ribosome translation, PHD Transcription_Regulator(from iTAK) structural constituent of ribosome, protein import into nucleus, |
| coexpression network | CFinderM000912 | intracellular, SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Ribosome translation, cellular protein modification process, structural constituent of ribosome, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM000913 | Ribosome translation, Ribosome intracellular, cullin-RING ubiquitin ligase complex, structural constituent of ribosome, ubiquitin protein ligase binding, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM000960 | Ubiquitin_mediated_proteolysis anaphase-promoting complex, cullin-RING ubiquitin ligase complex, |
| coexpression network | CFinderM000973 | STE_STE11 (from iTAK) protein import into nucleus, RNA_degradation phospholipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.