PH01000983G0460's details annotation
1.Annotation
ICBR annotation: ZF-HD protein dimerisation region containing protein, expressed
Blast result AT4G24660 : 1.00E-46
Blast annotation: homeobox protein 22
2.Location
Scaffold: PH01000983
Strand: -
| Region | Start | End |
| gene | 294391 | 298625 |
| mRNA | 294391 | 298625 |
| exon | 294391 | 298625 |
| CDS | 294486 | 294755 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000142 | ZF-HD Transcription_Regulator(from PlantTFDB) methylation, nucleobase-containing compound metabolic process, ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | zf-HD |
| Transcription_Regulator(from PlantTFDB) | ZF-HD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04770.11 | ZF-HD_dimer | 47 | 98 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.