PH01000985G0560's details annotation
1.Annotation
ICBR annotation: heat shock protein DnaJ, putative, expressed
Blast result AT5G49580 : 1.00E-153
Blast annotation: Chaperone DnaJ-domain superfamily protein
2.Location
Scaffold: PH01000985
Strand: -
| Region | Start | End |
| gene | 333137 | 340652 |
| mRNA | 333137 | 340652 |
| exon | 333137 | 333488 |
| exon | 334911 | 334982 |
| exon | 335128 | 335214 |
| exon | 335306 | 335464 |
| exon | 336492 | 336656 |
| exon | 336752 | 336832 |
| exon | 337250 | 337330 |
| exon | 337475 | 337932 |
| exon | 338012 | 338141 |
| exon | 339350 | 340652 |
| CDS | 333186 | 333488 |
| CDS | 334911 | 334982 |
| CDS | 335128 | 335214 |
| CDS | 335306 | 335464 |
| CDS | 336492 | 336656 |
| CDS | 336752 | 336832 |
| CDS | 337250 | 337330 |
| CDS | 337475 | 337932 |
| CDS | 338012 | 338141 |
| CDS | 339350 | 340138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000010 | Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_biosynthesis fatty acid metabolic process, acyl-[acyl-carrier-protein] desaturase activity, transition metal ion binding, |
| coexpression network | CFinderM000029 | B3 Transcription_Regulator(from PlantTFDB) HMG Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity regulation_of_cell_cycle |
| coexpression network | CFinderM000056 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_biosynthesis nucleus, transition metal ion binding, acyl-[acyl-carrier-protein] desaturase activity, fatty acid metabolic process, lipid biosynthetic process, sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity, fatty acid biosynthetic process, YABBY Transcription_Regulator(from PlantTFDB) C2C2-YABBY Transcription_Regulator(from iTAK) lipase activity, Rho GDP-dissociation inhibitor activity, |
| coexpression network | CFinderM000261 | protein_heterodimerization_activity NF-YB Transcription_Regulator(from PlantTFDB) nucleosome assembly, GRAS Transcription_Regulator(from PlantTFDB) nucleosome, Base_excision_repair Nucleotide_excision_repair DNA_replication |
| coexpression network | CFinderM000349 | chromatin assembly or disassembly, HMG Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 434 | 487 |
| PF14901.5 | Jiv90 | 593 | 690 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.